Table 1 Performance comparison on three datasets of different scales
From: VPAC: Variational projection for accurate clustering of single-cell transcriptomic data
Dataset | S-Set | M-Set | L-Set | |||
|---|---|---|---|---|---|---|
Model | ARI | NMI | ARI | NMI | ARI | NMI |
VPAC | 0.769 ± 0.000 | 0.759 ± 0.000 | 0.765 ± 0.000 | 0.765 ± 0.000 | 0.779 ± 0.000 | 0.769 ± 0.000 |
Para_DPMM | 0.675 ± 0.008 | 0.696 ± 0.008 | 0.704 ± 0.000 | 0.713 ± 0.002 | 0.700 ± 0.002 | 0.711 ± 0.002 |
pcaReduce | 0.290 ± 0.019 | 0.289 ± 0.010 | 0.279 ± 0.007 | 0.252 ± 0.007 | 0.311 ± 0.026 | 0.309 ± 0.044 |
Seurat | 0.378 ± 0.000 | 0.379 ± 0.000 | 0.379 ± 0.000 | 0.383 ± 0.000 | 0.383 ± 0.000 | 0.383 ± 0.000 |
SC3 | 0.724 ± 0.005 | 0.722 ± 0.010 | 0.724 ± 0.009 | 0.717 ± 0.007 | 0.523 ± 0.053 | 0.501 ± 0.030 |