Table 1 Evaluation of training sets based on their performance of measures
From: Computational enhancer prediction: evaluation and improvements
Class | Training set Name | Difference to randoma in REDfly recovery at cutoff | Difference to random in training set sensitivity at cutoff | Difference to random in expression pattern precision at cutoff |
|---|---|---|---|---|
Good | mapping1.blastoderm | 11.28777 | 15.29412 | 65.08609 |
mapping1.ectoderm | 6.000862 | 12.83019 | 39.83357 | |
mapping1.endoderm | 16.77476 | 10 | 39.38912 | |
mapping1.glia | 5.071332 | 60 | 16.60124 | |
mapping1.tracheal_system | 6.446144 | 37.27273 | 12.83098 | |
mapping1.visceral_mesoderm | 15.07699 | 30 | 20.70558 | |
mapping2.glia | 6.586659 | 60 | 6.326622 | |
mapping1.adult_mesoderm | 6.49964 | 26.66667 | 4.764122 | |
mapping1.mesectoderm | 4.541295 | 60 | 5.389122 | |
mapping1.ventral_ectoderm | 4.046977 | 32.22222 | 23.96055 | |
Intermediate | mapping1.amnioserosa | 0.839151 | 35 | 26.15835 |
mapping1.malpighian_tubules | 3.107168 | 26.66667 | 0.389122 | |
mapping1.dorsal_ectoderm | 1.833739 | 45.71429 | 18.03063 | |
mapping1.mesoderm | −0.00957 | 32.41379 | 23.1669 | |
mapping1.neuroectoderm | −1.26327 | 37.77778 | 12.6305 | |
mapping1.pns | −1.52394 | 10 | 18.57753 | |
mapping1.salivary_gland | 24.95711 | −4.28571 | 8.722456 | |
mapping1.somatic_muscle | 4.778675 | 8.717949 | 18.46605 | |
mapping2.ectoderm | 0.548001 | 8 | 51.79938 | |
mapping2.mesoderm | 13.1938 | −10.0935 | 44.00023 | |
mapping2.wing | −2.08398 | 7.727273 | 5.225188 | |
Poor | mapping1.cns | −2.33838 | 0.909091 | 61.32319 |
mapping1.eye | −4.91517 | 35 | −0.61088 | |
mapping2.eye | −3.869981 | 13.57143 | 0.040285 | |
mapping1.female_gonad | −15.4483 | −1.53846 | 23.96055 | |
mapping1.imaginal_disc | −4.60542 | 0.740741 | 17.05579 | |
mapping1.male_gonad | −5.34252 | 1.176471 | −4.61088 | |
mapping2.neuronal | −3.78756 | −2.7451 | 66.44175 | |
mapping2.reproductive_system | 1.796743 | −18.125 | −4.61088 |