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Table 2 Execution times of the examined codes depending on the RNA sequence length for 48 threads used

From: Tiling Nussinov’s RNA folding loop nest with a space-time approach

48 Threads Original Tile correction Tile correction Pluto (ATF) Space-Time Tiling Li (Transpose)
Seq. length   16 ×16×16 1 ×128×16 16 ×16×1 16 ×16×16  
2500 21.06 2.39 1.74 1.99 0.80 0.97
5000 243.43 18.08 8.77 19.04 5.78 13.72
7500 812.10 60.72 26.72 69.49 18.62 50.50
10000 1709.43 145.66 60.86 169.76 50.52 119.82
12500 3450.01 302.01 105.50 331.21 99.35 215.20
15000 5863.83 476.65 192.01 577.76 166.29 349.76