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Table 1 Curated tissue-type specific DNAm data sets used by pwrEWAS

From: pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)

Tissue Type

Accession Number

Subjects within GSE-ID limited to

Reference

Saliva

GSE92767

 

[38]

Lymphoma

GSE42372

disease state: non-HIV lymphoma

[39]

Placenta

GSE62733

health state: Normal

[40]

Liver

GSE61258

diseasestatus: Control

[41]

Colon

GSE77718

disease state: Normal

[42]

Blood (Adults)

GSE42861

subject: Normal

[43, 44]

Blood (Children)

GSE83334

age: 5 years

[45]

Blood (Newborns)

GSE82273

 

[46]

Cord-blood (whole blood)

GSE69176

  

Cord-blood (PBMC)

GSE110128

cord blood

[47]

Adult (PBMC)

GSE67170

disease state: control

[48]

  1. Representative data sets for the most commonly used tissue types for EWAS with inclusion criteria for subjects
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BMC Bioinformatics

ISSN: 1471-2105

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