CODA-ML: context-specific biological knowledge representation for systemic physiology analysis

BMC Bioinformatics

Table 1 Comparison with previous standard languages

	SBML	BEL	BioPax	BSML	CODA-ML
Isoform	X	△^a	O	X	O
Modifications	X	O	O	X	O
Anatomical context	△^b	△^b	△^b	O	O
Environmental context	X	X	X	O	O
Inter-organ/tissue/cell relation	O	O	O	O	O

^aIt does not explicitly mention how to deal with transcript isoforms
^bIt does not represent anatomical contexts in a hierarchical organization, thus only one anatomical context is possible

ISSN: 1471-2105