CollaboNet: collaboration of deep neural networks for biomedical named entity recognition

BMC Bioinformatics

Table 6 Case study

	Gene / Protein Dataset
CollaboNet	Troglitazone, a PPARgamma ligand, inhibits osteopontin gene expression in THP-1 cells.
Ground Truth	Troglitazone, a PPARgamma ligand, inhibits osteopontin gene expression in THP-1 cells
CollaboNet	The translesion DNA polymerase zeta plays a major role in lg and bcl-6 somatic hypermutation.
Ground Truth	The translesion DNA polymerase zeta plays a major role in lg and bcl-6 somatic hypermutation.
	Chemical Dataset
CollaboNet	recently identified Delta22-isomer of beta-muricholate contribute for 5.4%
Ground Truth	recently identified Delta22-isomer of beta-muricholate contribute for 5.4%
CollaboNet	Hexabrix and polyvidone are considered the best contrast media for hysterosalpingography.
Ground Truth	Hexabrix and polyvidone are considered the best contrast media for hysterosalpingography.

This table shows the questionable answers from the ground truth datasets. Our model achieves better performance in detecting entities in these example sentences. The predicted labels or the ground truth labels are underlined

ISSN: 1471-2105