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Table 6 Case study

From: CollaboNet: collaboration of deep neural networks for biomedical named entity recognition

  Gene / Protein Dataset
CollaboNet Troglitazone, a PPARgamma ligand, inhibits osteopontin gene expression in THP-1 cells.
Ground Truth Troglitazone, a PPARgamma ligand, inhibits osteopontin gene expression in THP-1 cells
CollaboNet The translesion DNA polymerase zeta plays a major role in lg and bcl-6 somatic hypermutation.
Ground Truth The translesion DNA polymerase zeta plays a major role in lg and bcl-6 somatic hypermutation.
  Chemical Dataset
CollaboNet recently identified Delta22-isomer of beta-muricholate contribute for 5.4%
Ground Truth recently identified Delta22-isomer of beta-muricholate contribute for 5.4%
CollaboNet Hexabrix and polyvidone are considered the best contrast media for hysterosalpingography.
Ground Truth Hexabrix and polyvidone are considered the best contrast media for hysterosalpingography.
  1. This table shows the questionable answers from the ground truth datasets. Our model achieves better performance in detecting entities in these example sentences. The predicted labels or the ground truth labels are underlined