Application | Reference &/or URL | Application Type | Data type | QDV |
|---|
CNVinspector | [13, 14] | Web application | Array CGH | No |
Ginkgo | [15, 16] | Web application | sc- WGS | No |
GenomeCAT | [17, 18] | Java application | Array CGH, WGS | No |
SNPitty | [19, 20] | Docker container | WGS | No |
Aneuvis | [6] | Web application | sc-WGSa, SKY, FISH | Yes |
- Each row contains data for a separate application, and columns specify features of each application. The URL for the application or source code, application type, and data type used are listed for each application. The capacity of the application to quantify the degree of numerical chromosomal variation (QDV) within and between treatment groups is also listed
- aRequires preprocessing from aligned .bam or .bed files into a copy number state matrix by an application such as Ginkgo
