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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Pathogenic Protist Transmembranome database (PPTdb): a web-based platform for searching and analysis of protist transmembrane proteins

Fig. 1

Analysis workflow of PPTdb Protein sequences collected were assigned functional annotations by the same software packages with equal parameters, including PROSITE, Pfam, Gene Ontology, and Super Family. The all-against-all primary sequence alignment executed by BLASTp was performed as well, and they were then stored in our back-end database. The system was armed with a high-speed database query system that allows the user to obtain the data instantly from the database. Four filters (transmembrane domain (TM), transporter GOs, iterative functional mining, and sequence homology) were used to help users to narrow their search results

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BMC Bioinformatics

ISSN: 1471-2105

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