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Table 1 Comparison of various metrics T.P., F.P., F.N., Precision, Recall and F-Measure in SNP calling between different tools

From: Better quality score compression through sequence-based quality smoothing

Smoothing algorithmT.P.F.P.F.N.PrecisionRecallF-Measure
None (original files)258815921980314937310.92170.63410.7513
YALFF260362022136814782640.92160.63780.7539
Quartz266121823782014206720.91800.65200.7624
Leon227851720480318033660.91750.55820.6941
Illumina 8bin254651821612815353700.92180.62390.7441
Pblock p =2257411121840515077730.92180.63060.7489
Pblock p =4255861221699515232730.92180.62680.7462
Rblock t =1.1255017921673815317060.92170.62480.7447
Rblock t =1.15252670421572115551810.92130.61900.7405
QVZ 0.6258870422573014931800.91980.63420.7507
QVZ 0.8258877322321014931120.92060.63420.7510