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Table 1 Comparison of various metrics T.P., F.P., F.N., Precision, Recall and F-Measure in SNP calling between different tools

From: Better quality score compression through sequence-based quality smoothing

Smoothing algorithm T.P. F.P. F.N. Precision Recall F-Measure
None (original files) 2588159 219803 1493731 0.9217 0.6341 0.7513
YALFF 2603620 221368 1478264 0.9216 0.6378 0.7539
Quartz 2661218 237820 1420672 0.9180 0.6520 0.7624
Leon 2278517 204803 1803366 0.9175 0.5582 0.6941
Illumina 8bin 2546518 216128 1535370 0.9218 0.6239 0.7441
Pblock p =2 2574111 218405 1507773 0.9218 0.6306 0.7489
Pblock p =4 2558612 216995 1523273 0.9218 0.6268 0.7462
Rblock t =1.1 2550179 216738 1531706 0.9217 0.6248 0.7447
Rblock t =1.15 2526704 215721 1555181 0.9213 0.6190 0.7405
QVZ 0.6 2588704 225730 1493180 0.9198 0.6342 0.7507
QVZ 0.8 2588773 223210 1493112 0.9206 0.6342 0.7510