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Table 2 Capability to identify correct alleles

From: STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data

SoftwarePercentage of no-outputCapability to identify correct alleles
STRAIN0.6% (22/3780)97.0% (3666/3780)
SRST2 high stringency1.8% (69/3780)94.8% (3583/3780)
SRST2 low stringency1.8% (69/3780)96.9% (3662/3780)
stringMLST high stringency0.3% (9/3780)28.5% (1076/3780)
stringMLST low stringency0.3% (9/3780)96.9% (3664/3780)
GRAbB2.7% (101/3780)92.6% (3499/3780)
  1. Summary of percentage of no-output and capability to identify correct alleles for STRAIN, SRST2, stringMLST and GRAbB. In bold the maximum value