Table 2 Capability to identify correct alleles
From: STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data
Software | Percentage of no-output | Capability to identify correct alleles |
|---|---|---|
STRAIN | 0.6% (22/3780) | 97.0% (3666/3780) |
SRST2 high stringency | 1.8% (69/3780) | 94.8% (3583/3780) |
SRST2 low stringency | 1.8% (69/3780) | 96.9% (3662/3780) |
stringMLST high stringency | 0.3% (9/3780) | 28.5% (1076/3780) |
stringMLST low stringency | 0.3% (9/3780) | 96.9% (3664/3780) |
GRAbB | 2.7% (101/3780) | 92.6% (3499/3780) |