Table 4 performances measured on trimmed datasets
From: STRAIN: an R package for multi-locus sequence typing from whole genome sequencing data
Software | Capability to identify correct alleles without trimming | Capability to identify correct alleles with trimming | Difference |
|---|---|---|---|
STRAIN | 97.0% (3666/3780) | 97.0% (3666/3780) | = |
SRST2 high stringency | 94.8% (3583/3780) | 96.0% (3630/3780) | + |
SRST2 low stringency | 96.9% (3662/3780) | 96.6% (3655/3780) | – |
stringMLST high stringency | 28.5% (1076/3780) | 24.1% (911/3738) | – |
stringMLST low stringency | 96.9% (3664/3780) | 96.2% (3638/3738) | – |