Table 2 Top 20 lncRNAs with highest degree from the chromatin graph
From: Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis
lncRNA name | Degree | To-gene degree | Chormosome | Annotation | RPKM | Conserved | Disease |
|---|---|---|---|---|---|---|---|
RP11-442N24__B.1,RNU11 | 26 | 9 | chr1 | lnc_transcr_enhancer | 227.4193 | no | yes |
RP4-798A10.7 | 21 | 5 | chr1 | lnc_transcr_enhancer | 16.0232 | no | no |
MIR17HG | 21 | 1 | chr13 | lnc_transcr_enhancer | 518.9101 | no | yes |
LINC00910 | 17 | 5 | chr17 | lnc_transcr_enhancer | 37.0585 | no | no |
RP11-1082L8.4 | 16 | 2 | chr8 | lnc_transcr_enhancer | 1.2984 | no | no |
LINC01287 | 14 | 0 | chr7 | lnc_transcr_enhancer | 77.8624 | no | no |
TERC | 13 | 3 | chr3 | lnc_CTCF | 111.0789 | no | yes |
AC073283.4 | 13 | 3 | chr2 | lnc_transcr_enhancer | 0.156 | no | no |
RP11-495P10.3 | 12 | 0 | chr1 | lnc_promoterFl | 1.0816 | no | no |
RP11-301G19.1 | 12 | 0 | chr6 | lnc_transcr_enhancer | 914.2072 | no | no |
KB-1732A1.1 | 12 | 1 | chr8 | lnc_transcr_enhancer | 1.0105 | no | no |
SNHG7 | 11 | 5 | chr9 | lnc_TSS | 112.0253 | no | no |
BZRAP1-AS1 | 11 | 0 | chr17 | lnc_transcr_enhancer | 6.9533 | no | no |
RP11-247A12.2 | 10 | 3 | chr9 | lnc_transcr_enhancer | 0.3745 | no | no |
CTD-2587H24.5 | 10 | 8 | chr19 | lnc_transcr_enhancer | 0.1669 | no | no |
CTD-2587H24.10 | 10 | 7 | chr19 | lnc_transcr_enhancer | 17.1446 | no | no |
SNHG16,RP11-666A8.8 | 9 | 4 | chr17 | lnc_promoterFl | 73.5648 | no | yes |
SNHG12 | 9 | 7 | chr1 | lnc_TSS | 229.3524 | no | no |
RP5-884M6.1 | 9 | 2 | chr7 | lnc_transcr_enhancer | 30.2113 | no | no |
RP11-539L10.3,AC093323.3 | 9 | 6 | chr4 | lnc_transcr_enhancer | 92.453 | no | no |