Table 1 Statistics about the simulated reads by PBSIM, LongISLND, NPBSS, PaSS and real sequencing data for E. coli K12 genome. Reads were aligned back to E. coli K12 genome
methods | aligned rate(read) | aligned rate(base) | error rate | insertion | deletion | substitution |
|---|---|---|---|---|---|---|
real data | 96.71% | 91.74% | 14.54% | 9.42% | 3.86% | 1.27% |
PBSIM | 99.99% | 99.73% | 12.27% | 7.22% | 3.16% | 1.89% |
LongISLND | 99.90% | 99.92% | 11.07% | 7.09% | 2.77% | 1.20% |
NPBSS | 100.00% | 99.93% | 11.48% | 2.67% | 6.05% | 2.76% |
PaSS | 95.84% | 92.53% | 14.39% | 8.97% | 3.80% | 1.62% |