Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

BMC Bioinformatics

Table 3 NGA50 of respectively contigs (top) and scaffolds (bottom) assembled by SPAdes after error correction by both BrownieCorrector and Karect

Tools	D1	D2	D3	D4	D5	D6	D7	D8	D9
	Contig NGA50
BrownieCorrector	13 334	11 015	6 328	52 152	38 670	45 400	83 397	88 877	71 788
Karect	12 507	10 103	6 295	54 106	29 286	41 391	85 226	85 881	68 873
Karect+BrownieCorrector	13 526	12 409	6 297	56 046	30 557	45 423	89 065	87 822	74 620
	Scaffold NGA50
BrownieCorrector	14 155	11 570	6 420	61 474	65 174	46 678	96 385	118 192	96 916
Karect	13 528	10 298	6 377	63 400	59 526	42 256	101 753	124 215	90 661
Karect+BrownieCorrector	14 613	12 795	6 380	65 857	62 706	46 332	103 872	126 449	104 037

ISSN: 1471-2105