Table 3 Summary of assembly of paralogous Arabidopsis genes
From: SRAssembler: Selective Recursive local Assembly of homologous genomic regions
Arabidopsis target | Total paralogs in clade | Complete paralogs | Complete gene bodies | Gene bodies >50% assembled |
|---|---|---|---|---|
At1g01040.2 | 6 | 1 (17%) | 1 (17%) | 1 (17%) |
At1g01050.1 | 6 | 4 (67%) | 4 (67%) | 5 (83%) |
At1g01090.1 | 3 | 1 (33%) | 1 (33%) | 1 (33%) |
At1g01230.1 | 2 | 1 (50%) | 2 (100%) | 2 (100%) |
At1g01560.2 | 29 | 3 (10%) | 5 (17%) | 17 (59%) |
At1g01620.1 | 37 | 12 (32%) | 14 (38%) | 17 (46%) |
At1g01750.2 | 12 | 9 (75%) | 10 (83%) | 10 (83%) |
At1g01820.1 | 5 | 3 (60%) | 3 (60%) | 3 (60%) |
At1g01910.1 | 3 | 1 (33%) | 1 (33%) | 3 (100%) |
At1g01940.1 | 30 | 3 (10%) | 6 (20%) | 12 (40%) |
At1g01950.3 | 64 | 1 (2%) | 1 (2%) | 10 (16%) |
At1g02130.1 | 63 | 22 (35%) | 30 (48%) | 40 (63%) |
At1g02140.1 | 1 | 1 (100%) | 1 (100%) | 1 (100%) |
At1g02500.1 | 4 | 3 (75%) | 4 (100%) | 4 (100%) |
At1g02560.1 | 10 | 2 (20%) | 3 (30%) | 3 (30%) |
At1g02780.1 | 4 | 3 (75%) | 3 (75%) | 3 (75%) |
At1g02830.1 | 3 | 3 (100%) | 3 (100%) | 3 (100%) |
At1g03190.1 | 6 | 1 (17%) | 1 (17%) | 1 (17%) |
At1g03475.1 | 2 | 2 (100%) | 2 (100%) | 2 (100%) |
At1g03630.1 | 5 | 3 (60%) | 3 (60%) | 3 (60%) |