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Table 10 Comparison of correlated targets between miRCancerdb and miRFA on protein expression level

From: miRFA: an automated pipeline for microRNA functional analysis with correlation support from TCGA and TCPA expression data in pancreatic cancer

miRCancerdb

miRFA

Input

Cor protein

KEGG genes

Percentage (%)

Gene names

Input

Cor protein

KEGG genes

Percentage (%)

Gene names

hsa-mir-144

5

0

0

NA

hsa-miR-144-3p

0

NA

NA

NA

hsa-mir-106b

3

2

67

AKT1/2/3, RB1

hsa-miR-106b-5p

0

NA

NA

NA

hsa-mir-101

0

NA

NA

NA

hsa-miR-101-3p

5

1

20

MTOR

hsa-mir-885

0

NA

NA

NA

hsa-miR-885-5p

6

2

33

EGFR, RAD51

hsa-mir-130b

3

1

33

SMAD4

hsa-miR-130b-3p

0

NA

NA

NA

hsa-mir-34a

2

1

50

SMAD4

hsa-miR-34a-5p

4

0

0

NA

hsa-mir-24

0

NA

NA

NA

hsa-miR-24-3p

16

1

6

EGFR

hsa-mir-22

3

2

67

AKT1/2/3, CDKN1A

hsa-miR-22-5p

10

1

10

PIK3CA

hsa-let-7d

4

3

75

AKT1/2/3, CDKN1A, RB1

hsa-let-7d-3p

0

NA

NA

NA

hsa-mir-122

0

NA

NA

NA

hsa-miR-122-5p

2

0

0

NA

  1. Cor protein = number of correlated miRNA – targets on mRNA level, KEGG genes = number of genes associated to KEGG pathway hsa05212 pancreatic cancer, percentage = percentage of KEGG genes compared to total number of correlated targets, NA = not available