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Table 1 List of alignment operations used in the Magic-BLAST alignment extension

From: Magic-BLAST, an accurate RNA-seq aligner for long and short reads

Operation Length Required number of matching bases Allowed number of mismatches
Substitution 1 9 0
Insertion 1 10 0
Deletion 1 10 0
Insertion 2 10 0
Deletion 2 10 0
Insertion 3 13 0
Deletion 3 13 0
Substitution 2 12 0
Insertion 1 10 2
Deletion 1 10 2
Insertion 2 10 2
Deletion 2 10 2
Insertion 3 13 2
Deletion 3 13 2