Table 1 List of alignment operations used in the Magic-BLAST alignment extension
From: Magic-BLAST, an accurate RNA-seq aligner for long and short reads
Operation | Length | Required number of matching bases | Allowed number of mismatches |
|---|---|---|---|
Substitution | 1 | 9 | 0 |
Insertion | 1 | 10 | 0 |
Deletion | 1 | 10 | 0 |
Insertion | 2 | 10 | 0 |
Deletion | 2 | 10 | 0 |
Insertion | 3 | 13 | 0 |
Deletion | 3 | 13 | 0 |
Substitution | 2 | 12 | 0 |
Insertion | 1 | 10 | 2 |
Deletion | 1 | 10 | 2 |
Insertion | 2 | 10 | 2 |
Deletion | 2 | 10 | 2 |
Insertion | 3 | 13 | 2 |
Deletion | 3 | 13 | 2 |