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Table 4 Performance comparison with other methods based on CYC2008

From: Identifying protein complexes based on an edge weight algorithm and core-attachment structure

Algorithms Recall Precision F-measure MMR CR
BioGRID
MCL 0.3516 0.2268 0.2758 0.1245 0.5310
CFinder 0.5720 0.1637 0.2546 0.3115 0.6135
Core 0.5847 0.1527 0.2422 0.2081 0.8058
DPClus 0.7839 0.1978 0.3158 0.304 0.8160
CMC 0.8644 1 st 0.2677 0.4088 0.4375 1 st 0.7639
COACH 0.7669 0.2488 0.3757 0.3042 0.8750 1 st
SPICi 0.5127 0.4039 0.4518 0.1997 0.6065
ClusterONE 0.6610 0.3487 0.4565 0.2734 0.7569
PEWCC 0.4025 0.5374 3rd 0.4603 3rd 0.2142 0.5431
ProRank+ 0.4153 0.6622 1 st 0.5104 2nd 0.246 0.5850
GMFTP 0.7838 3rd 0.2914 0.4249 0.3913 3rd 0.7956
DPC 0.7033 0.2874 0.4081 0.2643 0.8616 3rd
EWCA 0.8093 2nd 0.5793 2nd 0.6752 1 st 0.4351 2nd 0.8718 2nd
DIP
MCL 0.5169 0.1847 0.2721 0.1899 0.4892
CFinder 0.5508 0.2398 0.3342 0.2788 0.3807
Core 0.4618 0.1818 0.2609 0.2033 0.5317
DPClus 0.6651 3rd 0.1518 0.2473 0.2610 0.5184
CMC 0.5932 0.4125 0.4866 0.2501 0.5755 3rd
COACH 0.5423 0.5167 3rd 0.5292 2nd 0.2764 0.4879
SPICi 0.5000 0.2769 0.3564 0.1665 0.4600
ClusterONE 0.4279 0.3343 0.3753 0.1840 0.3750
PEWCC 0.5296 0.4852 0.5064 3rd 0.2847 3rd 0.4682
ProRank+ 0.3771 0.6923 1 st 0.4883 0.2029 0.3293
GMFTP 0.6652 2nd 0.2664 0.3804 0.3315 2nd 0.6085 1 st
DPC 0.4872 0.4598 0.4731 0.2146 0.4828
EWCA 0.7076 1 st 0.5239 2nd 0.6020 1 st 0.3766 1 st 0.5806 2nd
  1. NOTE: The highest value in each column is shown in bold