From: Identifying protein complexes based on an edge weight algorithm and core-attachment structure
Algorithms | Recall | Precision | F-measure | MMR | CR |
---|---|---|---|---|---|
BioGRID | |||||
MCL | 0.3516 | 0.2268 | 0.2758 | 0.1245 | 0.5310 |
CFinder | 0.5720 | 0.1637 | 0.2546 | 0.3115 | 0.6135 |
Core | 0.5847 | 0.1527 | 0.2422 | 0.2081 | 0.8058 |
DPClus | 0.7839 | 0.1978 | 0.3158 | 0.304 | 0.8160 |
CMC | 0.8644 1 st | 0.2677 | 0.4088 | 0.4375 1 st | 0.7639 |
COACH | 0.7669 | 0.2488 | 0.3757 | 0.3042 | 0.8750 1 st |
SPICi | 0.5127 | 0.4039 | 0.4518 | 0.1997 | 0.6065 |
ClusterONE | 0.6610 | 0.3487 | 0.4565 | 0.2734 | 0.7569 |
PEWCC | 0.4025 | 0.5374 3rd | 0.4603 3rd | 0.2142 | 0.5431 |
ProRank+ | 0.4153 | 0.6622 1 st | 0.5104 2nd | 0.246 | 0.5850 |
GMFTP | 0.7838 3rd | 0.2914 | 0.4249 | 0.3913 3rd | 0.7956 |
DPC | 0.7033 | 0.2874 | 0.4081 | 0.2643 | 0.8616 3rd |
EWCA | 0.8093 2nd | 0.5793 2nd | 0.6752 1 st | 0.4351 2nd | 0.8718 2nd |
DIP | |||||
MCL | 0.5169 | 0.1847 | 0.2721 | 0.1899 | 0.4892 |
CFinder | 0.5508 | 0.2398 | 0.3342 | 0.2788 | 0.3807 |
Core | 0.4618 | 0.1818 | 0.2609 | 0.2033 | 0.5317 |
DPClus | 0.6651 3rd | 0.1518 | 0.2473 | 0.2610 | 0.5184 |
CMC | 0.5932 | 0.4125 | 0.4866 | 0.2501 | 0.5755 3rd |
COACH | 0.5423 | 0.5167 3rd | 0.5292 2nd | 0.2764 | 0.4879 |
SPICi | 0.5000 | 0.2769 | 0.3564 | 0.1665 | 0.4600 |
ClusterONE | 0.4279 | 0.3343 | 0.3753 | 0.1840 | 0.3750 |
PEWCC | 0.5296 | 0.4852 | 0.5064 3rd | 0.2847 3rd | 0.4682 |
ProRank+ | 0.3771 | 0.6923 1 st | 0.4883 | 0.2029 | 0.3293 |
GMFTP | 0.6652 2nd | 0.2664 | 0.3804 | 0.3315 2nd | 0.6085 1 st |
DPC | 0.4872 | 0.4598 | 0.4731 | 0.2146 | 0.4828 |
EWCA | 0.7076 1 st | 0.5239 2nd | 0.6020 1 st | 0.3766 1 st | 0.5806 2nd |