Table 4 Performance comparison with other methods based on CYC2008

BioGRID

MCL

0.3516

0.2268

0.2758

0.1245

0.5310

CFinder

0.5720

0.1637

0.2546

0.3115

0.6135

Core

0.5847

0.1527

0.2422

0.2081

0.8058

DPClus

0.7839

0.1978

0.3158

0.304

0.8160

CMC

0.8644 ^{1 st}

0.2677

0.4088

0.4375 ^{1 st}

0.7639

COACH

0.7669

0.2488

0.3757

0.3042

0.8750 ^{1 st}

SPICi

0.5127

0.4039

0.4518

0.1997

0.6065

ClusterONE

0.6610

0.3487

0.4565

0.2734

0.7569

PEWCC

0.4025

0.5374 ^3rd

0.4603 ^3rd

0.2142

0.5431

ProRank+

0.4153

0.6622 ^{1 st}

0.5104 ^2nd

0.246

0.5850

GMFTP

0.7838 ^3rd

0.2914

0.4249

0.3913 ^3rd

0.7956

DPC

0.7033

0.2874

0.4081

0.2643

0.8616 ^3rd

EWCA

0.8093 ^2nd

0.5793 ^2nd

0.6752 ^{1 st}

0.4351 ^2nd

0.8718 ^2nd

DIP

MCL

0.5169

0.1847

0.2721

0.1899

0.4892

CFinder

0.5508

0.2398

0.3342

0.2788

0.3807

Core

0.4618

0.1818

0.2609

0.2033

0.5317

DPClus

0.6651 ^3rd

0.1518

0.2473

0.2610

0.5184

CMC

0.5932

0.4125

0.4866

0.2501

0.5755 ^3rd

COACH

0.5423

0.5167 ^3rd

0.5292 ^2nd

0.2764

0.4879

SPICi

0.5000

0.2769

0.3564

0.1665

0.4600

ClusterONE

0.4279

0.3343

0.3753

0.1840

0.3750

PEWCC

0.5296

0.4852

0.5064 ^3rd

0.2847 ^3rd

0.4682

ProRank+

0.3771

0.6923 ^{1 st}

0.4883

0.2029

0.3293

GMFTP

0.6652 ^2nd

0.2664

0.3804

0.3315 ^2nd

0.6085 ^{1 st}

DPC

0.4872

0.4598

0.4731

0.2146

0.4828

EWCA

0.7076 ^{1 st}

0.5239 ^2nd

0.6020 ^{1 st}

0.3766 ^{1 st}

0.5806 ^2nd