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Table 2 Mouse elements yielded by a variant of the procedure that exploits only information derived from H and P

From: A purely bioinformatic pipeline for the prediction of mammalian odorant receptor gene enhancers

Sequence set of origin mm10 coordinates PSWMs with at least a significant hit (first round) PSWMs with at least a significant hit (second round) Notes
EPO/mouse MOE 1 Mb threshold chr19:14694517–14,694,929 1, 4, 6, 8 1, 3, 4, 6, 8 Predicted enhancer in close proximity
EPO/mouse MOE 1 Mb threshold chr14:49188564–49,189,030 1, 4, 6, 8 1, 2, 4, 5, 6, 8 On a retained intron
EPO/mouse MOE 1 Mb threshold chr11:107760321–107,760,529 1, 8 1, 4, 6, 8
EPO/mouse MOE 1 Mb threshold chr7:100639235–100,639,627 1 1, 5, 8
GERP/mouse MOE 1 Mb threshold chr6:42869807–42,870,110 1, 2, 4, 5 1, 2, 4, 5, 6, 8 Overlaps with Sfaktiria
GERP/mouse MOE 1 Mb threshold chr6:42869789–42,870,106 1, 2, 4, 5 1, 2, 4, 5, 6, 8 Overlaps with Sfaktiria
  1. Sets of evolutionarily conserved mouse sequences found within olfactory loci were screened for occurrences of position-specific weight matrices (PSWMs) obtained from multi-aligments of H and P-related sequences (no other known elements being included). Such sets were obtained intersecting the mouse MOE 1 Mb threshold list with mouse Ensembl tracks as either “36 eutherian mammals EPO low coverage” (EPO/mouse MOE 1 Mb threshold) or “GERP constrained elements” (GERP/mouse MOE 1 Mb threshold)