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Table 1 Performance comparison of gene prediction tools on A. thaliana with the transition probabilities divided into three equal portions

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program AUGUSTUSGPRED-GC
   lowT=0.47lowT=0.30lowT=0.30lowT=0.60
   highT=0.63highT=0.60highT=0.70highT=0.70
BaseSen0.9680.9620.9630.9620.963
levelSpe0.7080.7090.7100.7100.710
ExonSen0.8700.8480.8480.8450.848
levelSpe0.6660.6690.6790.6800.679
GeneSen0.5540.5650.5480.5480.548
levelSpe0.3520.3600.3540.3540.354
Time(Sec.) 40.352.452.854.253.0
  1. Bold number indicates that sensitivity or specificity of GPRED-GC are higher than those of AUGUSTUS. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on A. thaliana dataset in seconds. Note: The running time is the total running time of prediction