Table 1 Performance comparison of gene prediction tools on A. thaliana with the transition probabilities divided into three equal portions
From: GPRED-GC: a Gene PREDiction model accounting for 5 ′- 3′ GC gradient
Program | AUGUSTUS | GPRED-GC | ||||
|---|---|---|---|---|---|---|
lowT=0.47 | lowT=0.30 | lowT=0.30 | lowT=0.60 | |||
highT=0.63 | highT=0.60 | highT=0.70 | highT=0.70 | |||
Base | Sen | 0.968 | 0.962 | 0.963 | 0.962 | 0.963 |
level | Spe | 0.708 | 0.709 | 0.710 | 0.710 | 0.710 |
Exon | Sen | 0.870 | 0.848 | 0.848 | 0.845 | 0.848 |
level | Spe | 0.666 | 0.669 | 0.679 | 0.680 | 0.679 |
Gene | Sen | 0.554 | 0.565 | 0.548 | 0.548 | 0.548 |
level | Spe | 0.352 | 0.360 | 0.354 | 0.354 | 0.354 |
Time(Sec.) | 40.3 | 52.4 | 52.8 | 54.2 | 53.0 | |