Table 3 Performance comparison of gene prediction on the first O. sativa data set with the transition probabilities divided into three equal parts
From: GPRED-GC: a Gene PREDiction model accounting for 5 ′- 3′ GC gradient
Program | AUGUSTUS | GPRED-GC | ||||
|---|---|---|---|---|---|---|
lowT=0.39 | lowT=0.35 | lowT=0.50 | lowT=0.40 | |||
highT=0.61 | highT=0.61 | highT=0.60 | highT=0.60 | |||
Base | Sen | 0.839 | 0.840 | 0.831 | 0.921 | 0.841 |
level | Spe | 0.892 | 0.902 | 0.898 | 0.883 | 0.901 |
Exon | Sen | 0.613 | 0.617 | 0.589 | 0.698 | 0.617 |
level | Spe | 0.694 | 0.733 | 0.715 | 0.692 | 0.725 |
Gene | Sen | 0.260 | 0.280 | 0.267 | 0.267 | 0.287 |
level | Spe | 0.235 | 0.261 | 0.250 | 0.234 | 0.267 |
Time(Sec.) | 37.6 | 58.1 | 58.2 | 57.0 | 56.0 | |