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Table 3 Performance comparison of gene prediction on the first O. sativa data set with the transition probabilities divided into three equal parts

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program AUGUSTUSGPRED-GC
   lowT=0.39lowT=0.35lowT=0.50lowT=0.40
   highT=0.61highT=0.61highT=0.60highT=0.60
BaseSen0.8390.8400.8310.9210.841
levelSpe0.8920.9020.8980.8830.901
ExonSen0.6130.6170.5890.6980.617
levelSpe0.6940.7330.7150.6920.725
GeneSen0.2600.2800.2670.2670.287
levelSpe0.2350.2610.2500.2340.267
Time(Sec.) 37.658.158.257.056.0
  1. Bold number indicates that sensitivity or specificity of GPRED-GC are higher than those of AUGUSTUS. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on the first O. sativa dataset in seconds. Note: The running time is the total running time of prediction