Table 6 Performance comparison of gene prediction tools on the second O. sativa data set with the transition probabilities trained using maximum likelihood estimation
From: GPRED-GC: a Gene PREDiction model accounting for 5 ′- 3′ GC gradient
Program | AUGUSTUS | GPRED-GC | ||||
|---|---|---|---|---|---|---|
lowT=0.31 | lowT=0.49 | lowT=0.30 | lowT=0.60 | |||
highT=0.52 | highT=0.52 | highT=0.50 | highT=0.70 | |||
Base | Sen | 0.859 | 0.955 | 0.945 | 0.948 | 0.858 |
level | Spe | 0.619 | 0.607 | 0.601 | 0.586 | 0.620 |
Exon | Sen | 0.670 | 0.798 | 0.769 | 0.765 | 0.665 |
level | Spe | 0.552 | 0.565 | 0.544 | 0.572 | 0.547 |
Gene | Sen | 0.355 | 0.425 | 0.360 | 0.350 | 0.370 |
level | Spe | 0.191 | 0.217 | 0.186 | 0.170 | 0.204 |
Time(Sec.) | 48.2 | 64.9 | 62.4 | 63.5 | 60.3 | |