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Table 6 Performance comparison of gene prediction tools on the second O. sativa data set with the transition probabilities trained using maximum likelihood estimation

From: GPRED-GC: a Gene PREDiction model accounting for 5 - 3 GC gradient

Program AUGUSTUSGPRED-GC
   lowT=0.31lowT=0.49lowT=0.30lowT=0.60
   highT=0.52highT=0.52highT=0.50highT=0.70
BaseSen0.8590.9550.9450.9480.858
levelSpe0.6190.6070.6010.5860.620
ExonSen0.6700.7980.7690.7650.665
levelSpe0.5520.5650.5440.5720.547
GeneSen0.3550.4250.3600.3500.370
levelSpe0.1910.2170.1860.1700.204
Time(Sec.) 48.264.962.463.560.3
  1. Bold number indicates that sensitivity or specificity of GPRED-GC are higher than those of AUGUSTUS. Time (Sec.) is the running time of AUGUSTUS and GPRED-GC under different sets of thresholds on the second O. sativa dataset in seconds. Note: The running time is the total running time of prediction