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Table 1 SNPs identified for the resistance to ciprofloxacin (CIP) by DNP-AAP

From: Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

ID Range

ID

AAP

Genes

Annotations

Known

[18797,18817]

18799

0.658

gyrA

DNA gyrase subunit A

✓

[4309,4366]

4363

0.536

parC

DNA topoisomerase IV subunit A

✓

 

5087

0.506

 

intergenic between NGK_0295 and NGK_0296 ∗

 
 

5075

0.497

NGK_0295

glutathione synthetase

 
 

34282

0.483

 

intergenic between NGK_2199 and NGK_2200 ∗

 
 

33843

0.482

NGK_2182

putative integral membrane protein

 
 

20553

0.478

NGK_1395

OTB_PSEPK Probable sugar efflux transporter

 
 

2285

0.477

NGK_0116

conserved hypothetical protein

 
 

34301

0.475

NGK_2201

hypoxanthine-guanine phosphoribosyltransferase

 
 

16353

0.447

NGK_1090

conjugal transfer pilus assembly protein TraD

 
  1. Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP.
  2. *NGK_0295: glutathione synthetase; NGK_0296: diacylglycerol kinase (DagK); NGK_2199: PtsH; NGK_2200: putative sugar transport PTS system IIA protein
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BMC Bioinformatics

ISSN: 1471-2105

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