Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

Table 2 SNPs identified for the resistance to cefixime (CFX) by DNP-AAP

ID Range	ID	AAP	Genes	Annotations	Known
	31799	0.423	NGK_rrna16s3	NGK_rrna16s3
[28398,28481]	28431	0.419	penA	penicillin-binding protein 2	✓
[28398,28481]	28418	0.406	penA	penicillin-binding protein 2	✓
	29914	0.402	NGK_rrna16s2	NGK_rrna16s2
[28398,28481]	28417	0.382	penA	penicillin-binding protein 2	✓
[28398,28481]	28428	0.382	penA	penicillin-binding protein 2	✓
	29915	0.376	NGK_rrna16s2	NGK_rrna16s2
	29916	0.370	NGK_rrna16s2	NGK_rrna16s2
[28398,28481]	28427	0.368	penA	penicillin-binding protein 2	✓
[28398,28481]	28429	0.367	penA	penicillin-binding protein 2	✓

Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP

ISSN: 1471-2105