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Table 4 SNPs identified for the resistance to tetracycline (TET) by DNP-AAP

From: Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

ID Range

ID

AAP

Genes

Annotations

Known

 

27095

0.470

 

intergenic between NGK_1771 and NGK_1772

 
 

21468

0.205

NGK_1458

putative phage associated protein

 

[37926,37927]

37927

0.196

rpsJ

30S ribosomal protein S10

 

29960

0.159

NGK_1968

IS1016 transposase

 
 

37300

0.150

NGK_2398

methionyl-tRNA formyltransferase

 
 

40041

0.131

NGK_2557

hemoglobin/transferrin/lactoferrin receptor

 
    

protein

 
 

21467

0.121

NGK_1458

putative phage associated protein

 
 

9785

0.120

NGK_0668

putative phage associated protein

 
 

9787

0.120

NGK_0668

putative phage associated protein

 
 

18761

0.119

NGK_1227

putative HTH-type transcriptional regulator

 
    

NMB1378

 
  1. Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP
  2. *NGK_1771: transferrin-binding protein A; NGK_1772: TbpB