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Table 5 SNPs identified for the resistance to azithromycin (AZM) by DNP-AAP

From: Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

ID Range

ID

AAP

Genes

Annotations

Known

 

27421

0.424

NGK_1776

conserved hypothetical protein

 
 

27690

0.420

NGK_1793

putative drug resistance protein

 
 

30659

0.300

NGK_2022

Infection response protein Irg2

 
 

36328

0.294

NGK_2342

pilC protein

 
 

36810

0.290

 

intergenic between NGK_2354 and NGK_2355 ∗

 
 

30434

0.278

 

intergenic between NGK_1994 and NGK_1995 ∗

 
 

21513

0.269

NGK_1463

putative phage associated protein

 
 

39676

0.266

NGK_2537

homoserine kinase

 
 

36809

0.258

 

intergenic between NGK_2354 and NGK_2355 ∗

 
 

29095

0.254

NGK_1872

phosphatidylglycerophosphatase A

 
  1. Annotations are from EnsemblBacteria. The column “ID Range” lists the ranges of SNPs that fall in known AMR-associated genes (only) in our data. ID: ID of Identified SNP
  2. *NGK_2354: Conserved hypothetical protein; NGK_2355: Hypothetical protein; NGK_1994: TspB2; NGK_1995: putative phage associated protein
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BMC Bioinformatics

ISSN: 1471-2105

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