Table 5 Comparison between the number of annotations per level in FunCat 2007 and FunCat 2018
From: Machine learning for discovering missing or wrong protein function annotations
Dataset | Â | Annotations per Level - 2007 | Annotations per Level - 2018 |
|---|---|---|---|
Cellcycle | Train | 3915/4629/3553/1727/363/11 | 4720/6219/4917/2266/536/16 |
| Â | Test | 3162/3744/2865/1351/291/8 | 3756/4949/3936/1734/399/15 |
| Â | Valid | 2029/2373/1813/865/194/10 | 2497/3286/2585/1169/283/13 |
Church | Train | 3913/4628/3554/1726/362/11 | 4723/6225/4923/2269/538/16 |
| Â | Test | 3156/3735/2858/1347/289/8 | 3754/4948/3928/1729/397/16 |
| Â | Valid | 2021/2362/1805/862/194/10 | 2486/3267/2572/1164/283/13 |
Derisi | Train | 3883/4586/3537/1716/361/11 | 4677/6159/4876/2248/529/16 |
| Â | Test | 3157/3741/2849/1343/289/8 | 3755/4963/3934/1728/399/15 |
| Â | Valid | 2021/2364/1805/858/194/10 | 2486/3271/2579/1162/283/13 |
Expr | Train | 3931/4646/3568/1732/363/11 | 4741/6246/4937/2274/538/16 |
| Â | Test | 3179/3762/2879/1354/291/8 | 3779/4980/3953/1739/400/16 |
| Â | Valid | 2030/2375/1815/866/194/10 | 2501/3291/2588/1170/283/13 |
Eisen | Train | 2627/3157/2489/1199/259/8 | 3216/4345/3457/1578/386/11 |
| Â | Test | 2130/2537/1977/929/195/4 | 2561/3428/2721/1179/269/9 |
| Â | Valid | 1311/1554/1209/584/126/7 | 1593/2107/1645/732/161/7 |
Gasch1 | Train | 3921/4636/3560/1728/363/11 | 4730/6232/4928/2270/538/16 |
| Â | Test | 3164/3745/2863/1347/289/8 | 3764/4965/3938/1732/398/16 |
| Â | Valid | 2025/2367/1807/863/194/10 | 2491/3273/2576/1166/283/13 |
Gasch2 | Train | 3931/4646/3568/1732/363/11 | 4741/6246/4937/2274/538/16 |
| Â | Test | 3179/3762/2879/1354/291/8 | 3779/4980/3953/1739/400/16 |
| Â | Valid | 2030/2375/1815/866/194/10 | 2501/3291/2588/1170/283/13 |
Hom | Train | 3971/4649/3566/1733/362/11 | 4772/6238/4936/2272/538/16 |
| Â | Test | 3196/3742/2866/1355/291/8 | 3808/4981/3957/1742/400/16 |
| Â | Valid | 2051/2366/1810/864/194/10 | 2516/3271/2577/1168/284/13 |
Pheno | Train | 1668/1977/1508/709/154/6 | 2008/2644/2095/939/234/8 |
| Â | Test | 1506/1764/1308/618/129/3 | 1750/2308/1814/803/177/8 |
| Â | Valid | 881/1014/753/362/81/6 | 1087/1423/1131/511/133/5 |
Spo | Train | 3854/4551/3512/1705/359/11 | 4645/6116/4842/2231/527/16 |
| Â | Test | 3133/3709/2831/1339/289/8 | 3727/4914/3904/1722/397/15 |
| Â | Valid | 2006/2346/1794/855/193/10 | 2464/3237/2552/1153/281/13 |
Seq | Train | 4037/4731/3626/1754/365/11 | 4847/6337/5006/2298/544/16 |
| Â | Test | 3242/3800/2914/1368/294/8 | 3856/5043/4003/1755/403/16 |
| Â | Valid | 2068/2390/1828/872/194/10 | 2546/3317/2608/1179/285/13 |
Struc | Train | 3994/4718/3615/1750/364/11 | 4806/6329/4997/2295/543/16 |
| Â | Test | 3207/3779/2890/1360/290/8 | 3819/5016/3978/1746/399/16 |
| Â | Valid | 2037/2373/1816/865/191/10 | 2515/3300/2596/1170/282/13 |
Mean | Train | 3637/4296/3304/1600/336/10 | 4385/5778/4570/2101/499/14 |
| Â | Test | 2950/3485/2664/1255/269/7 | 3509/4622/3668/1612/369/14 |
| Â | Valid | 1927/2250/1718/819/182/9 | 2306/3027/2383/1076/260/11 |