Table 8 Comparison between the number of annotated instances per level Gene Ontology 2007 and Gene Ontology 2018
From: Machine learning for discovering missing or wrong protein function annotations
Dataset | Â | Number of instances per level - GO 2007 | Number of instances per level - GO 2018 |
|---|---|---|---|
Cellcycle | Train | 1625/1598/1598/1591/1571/1531/1307/1072/655/407/193/74/18/10/0 | 1620/1620/1619/1607/1588/1543/1474/1321/1040/808/539/288/110/17/0 |
| Â | Test | 1278/1258/1258/1255/1242/1213/1047/858/499/319/157/62/13/7/0 | 1270/1270/1268/1264/1254/1224/1171/1037/800/620/423/252/91/11/3 |
| Â | Valid | 848/824/824/822/812/794/671/537/318/188/93/37/7/4/0 | 844/843/838/832/825/793/753/663/514/401/267/143/59/10/1 |
Church | Train | 1627/1600/1600/1593/1573/1534/1307/1071/654/406/193/74/18/10/0 | 1622/1622/1621/1609/1590/1546/1477/1322/1042/809/541/288/110/17/0 |
| Â | Test | 1278/1258/1258/1254/1241/1212/1046/858/501/319/157/62/13/7/0 | 1269/1269/1267/1263/1253/1224/1171/1037/799/621/424/253/91/11/3 |
| Â | Valid | 844/820/820/818/808/791/669/535/317/187/92/36/6/3/0 | 840/839/834/828/821/789/749/659/512/399/265/142/58/9/1 |
Derisi | Train | 1594/1567/1567/1560/1540/1501/1282/1058/647/402/191/74/18/10/0 | 1589/1589/1588/1576/1558/1515/1449/1299/1028/797/532/285/110/17/0 |
| Â | Test | 1257/1237/1237/1234/1222/1193/1029/846/496/317/155/61/13/7/0 | 1249/1249/1247/1243/1233/1204/1152/1019/792/614/418/252/91/11/3 |
| Â | Valid | 836/812/812/810/802/786/664/533/316/188/93/37/7/3/0 | 832/831/826/820/813/781/743/656/511/400/268/143/58/9/1 |
Expr | Train | 1636/1609/1609/1602/1582/1542/1313/1075/656/407/193/74/18/10/0 | 1631/1631/1630/1618/1598/1553/1483/1328/1045/812/541/288/110/17/0 |
| Â | Test | 1288/1268/1268/1264/1251/1222/1054/864/502/319/157/62/13/7/0 | 1280/1280/1278/1274/1264/1234/1181/1046/805/625/426/253/91/11/3 |
| Â | Valid | 849/825/825/823/813/795/672/538/319/189/93/37/7/4/0 | 845/844/839/833/826/794/754/664/515/402/268/143/59/10/1 |
Eisen | Train | 1055/1054/1054/1053/1050/1033/909/768/478/304/144/59/16/10/0 | 1053/1053/1053/1051/1043/1026/995/921/740/582/399/213/78/16/0 |
| Â | Test | 835/834/834/834/834/819/738/612/358/227/117/44/11/7/0 | 831/831/831/830/826/817/791/712/557/438/299/177/60/10/3 |
| Â | Valid | 528/527/527/526/524/519/453/373/231/141/64/30/4/2/0 | 526/526/526/526/522/511/496/450/350/279/189/103/44/7/1 |
Gasch1 | Train | 1631/1604/1604/1597/1577/1537/1310/1073/655/406/193/74/18/10/0 | 1626/1626/1625/1613/1593/1549/1480/1325/1043/810/541/288/110/17/0 |
| Â | Test | 1281/1261/1261/1257/1244/1215/1048/859/501/319/157/62/13/7/0 | 1273/1273/1271/1267/1257/1228/1175/1041/801/623/425/253/91/11/3 |
| Â | Valid | 846/822/822/820/810/793/670/536/317/187/92/36/6/3/0 | 842/841/836/830/823/791/751/661/513/400/266/142/58/9/1 |
Gasch2 | Train | 1636/1609/1609/1602/1582/1542/1313/1075/656/407/193/74/18/10/0 | 1631/1631/1630/1618/1598/1553/1483/1328/1045/812/541/288/110/17/0 |
| Â | Test | 1288/1268/1268/1264/1251/1222/1054/864/502/319/157/62/13/7/0 | 1280/1280/1278/1274/1264/1234/1181/1046/805/625/426/253/91/11/3 |
| Â | Valid | 849/825/825/823/813/795/672/538/319/189/93/37/7/4/0 | 845/844/839/833/826/794/754/664/515/402/268/143/59/10/1 |
Hom | Train | 1660/1633/1633/1626/1606/1567/1306/1068/653/408/196/74/18/10/0 | 1656/1656/1655/1643/1625/1563/1495/1342/1044/811/543/289/111/17/0 |
| Â | Test | 1309/1289/1289/1285/1273/1245/1050/860/504/320/157/62/13/7/0 | 1301/1301/1299/1295/1285/1243/1191/1059/804/626/425/252/91/11/3 |
| Â | Valid | 867/843/843/841/831/815/670/536/318/188/92/36/6/3/0 | 863/862/857/851/844/800/761/672/515/402/268/142/58/9/1 |
Pheno | Train | 653/639/639/638/629/612/511/419/257/160/73/25/8/6/0 | 650/650/650/643/638/620/587/516/404/322/232/129/55/11/0 |
| Â | Test | 581/573/573/572/564/548/462/383/230/139/73/33/9/5/0 | 576/576/575/573/569/555/535/474/368/283/207/127/50/6/1 |
| Â | Valid | 352/344/344/343/340/334/277/221/139/82/43/15/2/1/0 | 350/350/347/346/342/327/312/272/219/170/116/68/34/4/1 |
Dataset | Â | Number of instances per level - GO 2007 | Number of instances per level - GO 2018 |
Spo | Train | 1596/1569/1569/1562/1542/1503/1283/1058/647/402/191/74/18/10/0 | 1591/1591/1590/1578/1560/1517/1451/1301/1028/797/532/285/110/17/0 |
| Â | Test | 1258/1238/1238/1235/1223/1194/1030/847/495/316/155/61/13/7/0 | 1250/1250/1248/1244/1234/1205/1153/1019/793/615/419/252/91/11/3 |
| Â | Valid | 836/812/812/810/802/786/664/532/315/187/92/37/7/3/0 | 832/831/826/820/813/781/743/655/510/399/267/143/58/9/1 |
Seq | Train | 1691/1664/1664/1657/1637/1597/1326/1085/663/413/199/74/18/10/0 | 1686/1686/1685/1673/1653/1590/1520/1367/1057/823/548/294/111/17/0 |
| Â | Test | 1332/1311/1311/1307/1294/1265/1066/872/506/322/158/62/13/7/0 | 1324/1324/1322/1318/1308/1263/1209/1074/814/634/430/254/91/11/3 |
| Â | Valid | 836/812/812/810/802/786/664/532/315/187/92/37/7/3/0 | 832/831/826/820/813/781/743/655/510/399/267/143/58/9/1 |
Struc | Train | 1658/1631/1631/1624/1604/1564/1323/1082/661/411/198/74/18/10/0 | 1653/1653/1652/1640/1620/1571/1502/1348/1054/820/546/293/111/17/0 |
| Â | Test | 1306/1285/1285/1281/1268/1239/1061/867/503/320/157/62/13/7/0 | 1298/1298/1296/1292/1282/1246/1192/1058/810/631/428/253/91/11/3 |
| Â | Valid | 859/835/835/833/823/805/674/539/321/191/94/37/7/4/0 | 855/854/849/843/836/800/759/671/518/405/271/143/59/10/1 |
Mean | Train | 1505/1481/1481/1475/1457/1421/1207/992/606/377/179/68/17/9/0 | 1500/1500/1499/1489/1472/1428/1366/1226/964/750/502/269/103/16/0 |
| Â | Test | 1268/1268/1265/1252/1223/1047/861/502/316/157/62/13/7/0/0 | 1278/1278/1276/1272/1261/1228/1176/1042/799/621/425/253/92/11/3s |
| Â | Valid | 823/823/821/813/797/669/534/315/188/91/36/6/3/0/0 | 823/822/817/812/805/770/734/649/502/392/263/139/58/9/1 |