Table 1 The Pearson’s correlation coefficients between the three measures of 3D and 2D structural properties and genetic/epigenetic features
From: Exploring the 2D and 3D structural properties of topologically associating domains
Methods | Gene density | CTCF | RNA polII | H3K4me3 | H3K9me3 | H3K27me3 | H3K36me3 |
|---|---|---|---|---|---|---|---|
Folding degree | −0.135 | − 0.133 | − 0.189 | −0.164 | − 0.003 | −0.009 | − 0.157 |
Rg (mass_unit) | −0.198 | − 0.460 | −0.304 | − 0.266 | −0.410 | − 0.405 | −0.447 |
Rg (mass_TSS) | −0.229 | −0.467 | − 0.319 | −0.279 | − 0.404 | −0.402 | − 0.455 |
Rg (mass_or) | −0.205 | − 0.455 | −0.311 | − 0.272 | −0.396 | − 0.394 | −0.447 |
Rg (mass_and) | −0.218 | −0.457 | − 0.311 | −0.271 | − 0.395 | −0.395 | − 0.449 |
Exponent parameter | 0.298 | 0.491 | 0.370 | 0.423 | 0.313 | 0.355 | 0.500 |