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Fig. 3 | BMC Bioinformatics

Fig. 3

From: PyBDA: a command line tool for automated analysis of big biological data sets

Fig. 3

An example of a single-cell image used for segmentation and extraction of image features. We extracted image features of 150 million individual cells, their nuclei and their perinuclei. Cell bodies are stained in yellow, nuclei in blue, pathogens in green (left image). Features consist of cell, nucleus and perinuclei properties and information about local cell neighborhood, and if a cell is infected with a pathogen or not (right image)

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