PyBDA: a command line tool for automated analysis of big biological data sets

BMC Bioinformatics

Table 2 Methods provided by PyBDA

Category	Method	Implementation
Dimension reduction	PCA	MLLib
	Factor analysis	custom implementation
	k-PCA	custom implementation
	Linear discriminant analysis	custom implementation
	Independent component analysis	custom implementation
Clustering	k-means	MLLib
	Gaussian mixture models	MLLib
Supervised learning	Random forests	MLLib
	Gradient boosting	MLLib
	Generalized linear models	MLLib

ISSN: 1471-2105