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Table 2 Incorrect haplotype block percentage (%) obtained by the tools when applied on chromosomes 1, 6, and 17

From: Exploring effective approaches for haplotype block phasing

Tool Chr1 Chr6 Chr17
Consensus haplotype 0.45 0.41 0.46
BEAGLE 0.46 0.43 0.49
SHAPEIT2 0.47 0.42 0.51
EAGLE2 0.48 0.44 0.48
HAPI-UR 1.26 1.27 1.25
IMPUTE 1.17 1.18 1.47
fastPHASE 0.54 0.5 0.58
MaCH - - 0.54
  1. Numbers in bold are the minimum error obtained by any approach while underlined numbers are the minimum error for a single tool. MaCH was excluded from the tests applied on chromosome 1, and 6 due to extensive performance time