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Table 1 For each of the three TE classes we report the number of TE fragments fixed in the human reference genome (hg38), those in the set used for our eQTL analysis and those displaying significant cis-eQTL associations. ES: extended set

From: Impact of polymorphic transposable elements on transcription in lymphoblastoid cell lines from public data

 

Reference

TEV ES

TEV ES cis-eQTL

Alu

1,186,920

7208

267

L1

1,001,258

935

21

SVA

5750

406

35

Total

2,193,928

8551

323

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BMC Bioinformatics

ISSN: 1471-2105

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