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Table 2 Details of contig sets

From: SLR: a scaffolding algorithm based on long reads and contig classification

Contig set

Count

Errors

Genome

Mismatches

Indels

Largest

NA50

NGA50

   

Fraction(%)

  

alignment

  

E. coli_1

182

2

99.363

1.32

0.37

315,628

106,208

106,208

E. coli_2

167

7

99.351

2.28

0.11

360,084

164,044

164,044

S. cerevisiae_1

3179

35

96.688

79.03

8.42

233,103

47,994

52,239

S. cerevisiae_2

6953

53

96.687

85.54

8.76

250,180

49,258

54,160

Chr X_1

8623

41

97.037

2.40

1.28

793,618

76,506

71,372

  1. The contig set about E. coli_1 and S. cerevisiae_1 are provided by [29], the contig set about E. coli_2 and S. cerevisiae_2 are provided by [30], and the contig set about Chr X_1 are provided by [31]
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BMC Bioinformatics

ISSN: 1471-2105

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