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Table 4 Performance comparison of dimensionality reduction methods on BRCA dataset

From: A hierarchical integration deep flexible neural forest framework for cancer subtype classification by integrating multi-omics data

Data PCA NMF SAE
DNA methylation 0.692 0.654 0.731
miRNA expression 0.731 0.692 0.769
Gene expression 0.769 0.731 0.808
Integrative Data 0.808 0.769 0.846