Fig. 8
From: A binning tool to reconstruct viral haplotypes from assembled contigs
Window construction from aligned contigs. a Three haplotypes with mutations at three locations. Line weights represent the haplotype abundance. S1 and S2 are two mutation-free regions common to three haplotypes. S1 and S2 are at least 1k bp. b The alignment of contigs that satisfy the ideal condition. The grey-scale intensity represents the coverage of a contig. Three windows are produced. c The contigs that cannot cover all the three haplotypes. There are six windows. Their depth values are denoted below each window. For contig marked with “A S2”, its sequencing coverage is plotted above the contig