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Table 1 Datasets used in this paper

From: DEEPSEN: a convolutional neural network based method for super-enhancer prediction

Data TypeData NameGEO ID
Transcription factorsOct4, Sox2, Nanog, Esrrb, Klf4, Smad3, Tcfcp2l1, Prdm14, Stat3, Tcf3, Nr5a2GSE44286, GSM288355, GSM288354, GSM623989, GSM53954
Mediator complexMED1GSM560348,GSM560345
Histone modificationsH3K27ac, H3K4me1, H3K4me3, H3K9me3GSM594579, GSM281695, GSM307149, GSM18371
RNA polymeraseRNA PolGSM318444
Hypersensitive siteDNaseIGSM1014154
Co-activatorsp300, CBPGSM918750,GSM1246866
Chromatin regulatorsBrg1, Brd4, Chd7GSM896923, GSM937540, GSM558674
CohesionNipbl, Smc1GSM560350,GSM560342
Mediator complexMED12GSM560348,GSM560345
Lsd1-NuRD complexLsd1, Mi2bGSM687282,GSM687284