Table 1 Datasets used in this paper
From: DEEPSEN: a convolutional neural network based method for super-enhancer prediction
Data Type | Data Name | GEO ID |
|---|---|---|
Transcription factors | Oct4, Sox2, Nanog, Esrrb, Klf4, Smad3, Tcfcp2l1, Prdm14, Stat3, Tcf3, Nr5a2 | GSE44286, GSM288355, GSM288354, GSM623989, GSM53954 |
Mediator complex | MED1 | GSM560348,GSM560345 |
Histone modifications | H3K27ac, H3K4me1, H3K4me3, H3K9me3 | GSM594579, GSM281695, GSM307149, GSM18371 |
RNA polymerase | RNA Pol | GSM318444 |
Hypersensitive site | DNaseI | GSM1014154 |
Co-activators | p300, CBP | GSM918750,GSM1246866 |
Chromatin regulators | Brg1, Brd4, Chd7 | GSM896923, GSM937540, GSM558674 |
Cohesion | Nipbl, Smc1 | GSM560350,GSM560342 |
Mediator complex | MED12 | GSM560348,GSM560345 |
Lsd1-NuRD complex | Lsd1, Mi2b | GSM687282,GSM687284 |