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Table 1 Transcriptomic sequencing runs

From: VARUS: sampling complementary RNA reads from the sequence read archive

SpeciesTranscriptomic runs in SRA≤ 5% of reads align uniquely
Anopheles gambiae59715.5%
Bombus terrestris3576.4%
Chlamydomonas reinhardtii12507.1%
Cucumis sativus68521.2%
Drosophila melanogaster3020722.8%
Fragaria vesca17010.6%
Hymenolepis microstoma3132.2%
Medicago truncatula12529.2%
Parasteatoda tepidariorum8016.3%
Prunus persica26813.2%
Saccharomyces cerevisiae1613930.5%
Verticillium dahliae3040.0%
  1. The second column shows the total number of RNA runs in SRA for the studied species. The last column shows the percentage of runs that were sampled by VARUS of which the first batch exhibited very low unique alignability, more specifically, at least 95% of reads aligned either not at all or multiple times using HISAT2. Such runs are subsequently ignored by VARUS