Table 2 Assessment of DFIRE and DOPE scoring functions on the principal interaction model and the full interaction model on Decoy Sets
From: Identification of native protein structures captured by principal interactions
Decoy Set | DFIRE | DOPE | ||||
|---|---|---|---|---|---|---|
CASP10–13 | 3DRobot | Total/Average | CASP10–13 | 3DRobot | Total/Average | |
Top1 | 54 (56) | 13 (12) | 67 (68) | 75 (74) | 63 (71) | 138 (145) |
Z-score | 1.18 (1.18) | 1.33 (1.20) | 1.92 (1.19) | 1.39 (1.37) | 1.64 (1.90) | 1.51 (1.63) |
RMSD | 6.95 (6.01) | 2.02 (1.44) | 4.48 (3.72) | 5.55 (5.31) | 1.28 (0.82) | 3.41 (3.06) |
PC | 0.56 (0.51) | 0.80 (0.81) | 0.68 (0.66) | 0.54 (0.44) | 0.81 (0.82) | 0.67 (0.63) |
F.E. | 1.59 (1.56) | 3.73 (3.74) | 2.66 (2.65) | 1.63 (1.58) | 3.86 (3.87) | 2.74 (2.72) |
Z-scoreb | 0.54 (0.47) | 1.45 (1.65) | 1.00 (1.06) | 0.53 (0.46) | 1.54 (1.77) | 1.03 (1.11) |
PI | 0.18 ± 0.05 | 0.19 ± 0.05 | 0.18 ± 0.05 | 0.19 ± 0.05 | 0.21 ± 0.05 | 0.20 ± 0.05 |
#Target | 175 | 200 | 375 | 175 | 200 | 375 |