From: Manhattan++: displaying genome-wide association summary statistics with multiple annotation layers
idx | Min count | maf | conseq | col | report | Description |
---|---|---|---|---|---|---|
1 | 1 | FALSE | FALSE | black | FALSE | Cells with one variant are black. |
2 | 1 | FALSE | TRUE | light pink | TRUE | Cells with one variant with high conseq are light pink. |
3 | 1 | TRUE | FALSE | green | FALSE | Cells with one variant with MAF less than threshold are green. |
4 | 1 | TRUE | TRUE | dark magenta | TRUE | Cells with one variant with MAF less than threshold and high conseq are dark magenta. |
5 | 2 | FALSE | FALSE | blue | FALSE | Cells with 2 or more variants are blue. |
6 | 2 | FALSE | TRUE | pink | TRUE | Cells with 2 or more variants with high conseq in at least one are pink. |
7 | 2 | TRUE | FALSE | red | FALSE | Cells with 2 or more variants with a MAF less than threshold in at least one are red. |
8 | 2 | TRUE | TRUE | cyan | TRUE | Cells with 2 or more variants with at least one variant with MAF less than threshold and at least one variant with the conseq flag are cyan. |