Fig. 5
Equivalent regions and maximum parsimony reconciliations. Example continued from Figs. 2, 3, and 4. a The landscape of equivalent regions. Regions are polygons, lines, or points; colors are arbitrary and are used to match regions with the event counts in the legend. In addition, the number of LCTs with each event count, and the default cost setting for DLCpar (CD=1,CL=1,CC=0.5) are shown. b Most parsimonious reconciliations for each region. DLCparETO does not return these MPRs, but for a fixed setting of event costs, DLCpar returns an MPR sampled uniformly at random. [Figure and caption adapted with permission from Du et al. [11] and Wu et al. [10]. Gray boxes indicate new content]