Table 4 The performance of VariFAST for false positive variants filtering at the maximum Fβ score for six standard sequencing datasets
From: VariFAST: a variant filter by automated scoring based on tagged-signatures
ID | HG001_a | HG001_b | HG001_c | HG002 | HG003 | HG004 |
|---|---|---|---|---|---|---|
v-score | 3.7 | 3.7 | 3.6 | 3.5 | 3.3 | 3.4 |
Fβ score | 89.7% | 89.4% | 89.5% | 86.5% | 86.0% | 86.3% |
Precision | 90.4% | 90.2% | 90.4% | 86.8% | 86.6% | 86.8% |
Recall | 82.5% | 81.6% | 80.1% | 83.3% | 80.0% | 81.6% |
Accuracy | 77.8% | 77.8% | 76.8% | 75.8% | 73.6% | 74.8% |
MCC | 0.3 | 0.38 | 0.37 | 0.22 | 0.23 | 0.23 |