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Table 9 Best-Predicted Proteins using LASSO

From: Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

CombinedBRCAOVA
Protein NamePCCProtein NamePCCProtein NamePCC
CMBL0.8490182NUCB20.8796467OXCT10.9077667
WFDC20.8407794CRAT0.8784636PLAA0.9068848
ASS10.8349155PREX10.8697881DDX580.9059744
INPP4B0.8283892HSPA20.8610863C9orf640.899744
ALCAM0.8207547KANK10.858247ABHD14B0.8889331
TUBB30.8137392SLC9A3R10.8511751SLC34A20.8820199
CRAT0.8101374H2AFY20.8503076OAS20.8815647
LGALS30.8087911STK390.8479941DHX290.8793457
CRABP20.8033509FKBP50.8478364NMNAT10.878037
CD1090.7873721PHGDH0.8454966GBP20.8727454
  1. The list of proteins with the highest mean correlation between predicted value and actual value across 10-fold cross-validation. These predictions are generated using the LASSO model. PCC: Pearson correlation coefficient