Table 1 The analysis of data output quality. Sample: Sample name_1, left reads; Sample name_2, right reads. The total number of clean reads is left + right. Q20: the percentage of bases with a phred value > 20. Q30: the percentage of bases with a phred value > 30. GC content: the GC ratio of the total base number
Sample | Raw Reads | Clean reads | Clean bases (G) | Error (%) | Q20 (%) | Q30 (%) | GC (%) |
|---|---|---|---|---|---|---|---|
TV_1_1 | 35,922,083 | 33,853,965 | 3.39 | 0.04 | 96.64 | 90.17 | 52.56 |
TV_1_2 | 35,922,083 | 33,853,965 | 3.39 | 0.05 | 95.45 | 88.16 | 52.60 |
TV_2_1 | 35,822,179 | 33,894,300 | 3.39 | 0.04 | 96.64 | 90.14 | 52.98 |
TV_2_2 | 35,822,179 | 33,894,300 | 3.39 | 0.05 | 95.46 | 88.16 | 53.03 |
TV_3_1 | 44,653,016 | 42,244,063 | 4.22 | 0.04 | 96.63 | 90.10 | 53.02 |
TV_3_2 | 44,653,016 | 42,244,063 | 4.22 | 0.05 | 95.41 | 88.03 | 53.06 |
TF_1_1 | 36,420,947 | 34,377,877 | 3.44 | 0.04 | 96.51 | 89.87 | 52.74 |
TF_1_2 | 36,420,947 | 34,377,877 | 3.44 | 0.05 | 95.26 | 87.75 | 52.80 |
TF_2_1 | 40,450,621 | 38,236,522 | 3.82 | 0.04 | 96.58 | 90.01 | 52.88 |
TF_2_2 | 40,450,621 | 38,236,522 | 3.82 | 0.05 | 95.44 | 88.09 | 52.94 |
TF_3_1 | 40,982,518 | 38,751,791 | 3.88 | 0.04 | 96.70 | 90.29 | 52.28 |
TF_3_2 | 40,982,518 | 38,751,791 | 3.88 | 0.05 | 95.57 | 88.39 | 52.32 |