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Table 2 Basic sequencing information and windows size estimation on 10 samples

From: A systematic evaluation of copy number alterations detection methods on real SNP array and deep sequencing data

SampleReadsCoverage (fold)PloidyWindow size (bp)
TumorNormalTumorNormal(ref)CNVseqFREECReadDepth
3571,891,204,4181,947,625,11861632 (GPHMM)1225618500
620,3802,318,387,4582,660,245,98275862 (GPHMM)940493600
K21100561,665,457,5421,614,695,95054522 (GPHMM)1423695600
K21500241,468,032,8641,821,106,02247592 (GPHMM)1456780600
K23100071,707,025,0981,534,828,47655502 (GPHMM)1453670600
K23100241,795,611,5761,914,189,01658622 (GPHMM)1261637600
K23100301,565,239,1381,552,514,10651502 (GPHMM)1493730600
RS1145271,750,239,9461,406,561,49257454 (OncoSNP)1517655600
K21100971,561,020,5881,821,446,46250593 (GPHMM)1725740600
K21500511,584,801,5781,523,937,25851494 (GAP)1509726600