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Table 1 The success rates (%) predicted by our docking program with LSC and four other docking approaches with shape-based scoring functions on the protein docking benchmark 4.0 of 176 test cases when the top 1, 10, 100, and 100 predictions were considered

From: Pushing the accuracy limit of shape complementarity for protein-protein docking

Method

Bound docking

 

Unbound docking

 

1

10

100

1000

 

1

10

100

1000

LSC

34.09

51.71

69.32

87.50

 

2.84

6.82

26.14

55.11

ZDOCK 2.1

25.57

42.61

61.36

83.52

 

1.71

4.55

23.86

48.86

MolFit/G

24.43

33.52

51.14

79.55

 

1.14

2.84

18.75

46.02

GRAMM

9.09

15.91

38.64

67.61

 

0.00

2.84

10.80

30.68

FTDock/G

4.55

14.21

43.18

77.27

 

0.57

1.71

11.36

42.61