Table 1 Comparison of memory occupied by different strategies
From: DTA-SiST: de novo transcriptome assembly by using simplified suffix trees
Reads | 50bp | 75bp | 100bp | 50bp | 50bp |
|---|---|---|---|---|---|
0.1million | 0.1million | 0.1million | 0.5million | 1million | |
Suffix tree | 68.3M | 143.5M | 220.5M | 85.1M | 94.3M |
Single-k | 20.8M | 34.7M | 49.2M | 78.5M | 149.3M |
Multiple-k | 286.0M | 572.9M | 899.5M | 445.9M | 640.6M |