Table 11 Comparison with other methods on three benchmark datasets
Dataset | Prediction accuracy(%) | |||||
|---|---|---|---|---|---|---|
Method | all-α | all-β | α/β | α + β | OA | |
25PDB | MEDP [58] | 87.8 | 78.3 | 76.0 | 57.4 | 74.8 |
SCPRED [22] | 92.6 | 80.1 | 74.0 | 71.0 | 79.7 | |
PKS-PPSC [59] | 89.2 | 86.7 | 82.6 | 65.6 | 81.3 | |
Zhang et al. [23] | 92.4 | 87.4 | 82.0 | 71.0 | 83.9 | |
PSSS-PSSM [25] | 96.6 | 87.1 | 83.0 | 78.9 | 86.6 | |
PSSS-PsePSSM [60] | 96.4 | 90.5 | 90.2 | 81.2 | 89.5 | |
WD-PseAAC [53] | 95.7 | 97.7 | 94.8 | 84.4 | 93.1 | |
This paper | 98.0 | 98.9 | 98.0 | 97.5 | 98.1 | |
1189 | MEDP [58] | 85.2 | 84.0 | 84.4 | 45.2 | 75.8 |
SCPRED [22] | 89.1 | 86.7 | 89.6 | 53.8 | 80.6 | |
PKS-PPSC [59] | 89.2 | 86.7 | 82.6 | 65.6 | 81.3 | |
Zhang et al. [23] | 92.4 | 87.4 | 82.0 | 71.0 | 83.2 | |
PSSS-PSSM [25] | 94.2 | 88.4 | 85.3 | 71.8 | 85.0 | |
PSSS-PsePSSM [60] | 91.9 | 91.8 | 87.7 | 73.9 | 86.6 | |
WD-PseAAC [53] | 98.7 | 99.0 | 94.0 | 68.9 | 90.8 | |
This paper | 98.2 | 99.3 | 99.1 | 91.3 | 97.3 | |
640 | MEDP [58] | 84.8 | 75.3 | 86.4 | 53.8 | 74.7 |
SCPRED [22] | 90.6 | 81.8 | 85.9 | 66.7 | 80.8 | |
PKS-PPSC [59] | 89.1 | 85.1 | 88.1 | 71.4 | 83.1 | |
Zhang et al. [23] | – | – | – | – | – | |
PSSS-PSSM [25] | – | – | – | – | – | |
PSSS-PsePSSM [60] | 87.0 | 81.2 | 84.7 | 70.8 | 81.0 | |
WD-PseAAC [53] | 92.8 | 95.5 | 92.1 | 78.9 | 89.5 | |
This paper | 95.7 | 98.1 | 97.2 | 93.6 | 96.1 | |