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Table 2 The second set of weights of the epigenomic, transcriptomic and proteomic variables extracted by msPLS from the Marfan data

From: Multiset sparse partial least squares path modeling for high dimensional omics data analysis

Methylation markers Gene expression markers Cytokine markers
Site w Gene code w Marker code w
cg23054189 0.93 AGTR2 -0.59 b NGF 46 0.57
cg18347642 0.93 C2orf43 0.87 CTACK 72 0.52
cg16489610 0.85 CCDC112 0.87 GRO a 61 0.16
cg27013696 0.91 DKFZP434 -0.58 HGF 62 -0.08
cg20457796 0.93 GMCL1 0.88 Hu Eotaxin 43 0.12
cg03181582 0.91 LPO -0.77 Hu FGF basic 44 0.23
cg10521851 0.9 MAD2L1 0.74 Hu G.CSF 57 -0.57
cg19968840 0.92 MGC4473 -0.81 Hu GM CSF 34 -0.03
cg27648075 0.92 NFAM1 -0.7 Hu IFN g 21 -0.03
cg22891500 0.92 NMI 0.8 Hu Il 10 56 0.17
cg05158197 0.92 PF4 -0.83 Hu IL 12 p70 75 0.43
cg20119106 0.93 PRDM14 -0.71 Hu IL 13 51 0.26
cg02675353 0.91 PSMA8 -0.63 Hu IL 15 73 0.67
cg26991025 0.93 RDM1 0.47 Hu IL 17 76 -0.14
cg20643012 0.92 RNF8 0.69 Hu IL 1b 39 -0.03
   TTC30A 0.8 Hu IL 1ra 25 -0.03
   TTC30B 0.68 Hu IL 2 38 0.36
   TTC4 0.81 Hu IL 4 52 0.67
   UNQ6126 -0.79 Hu IL 5 33 0.23
   ZNF677 0.86 Hu IL 6 19 -0.04
     Hu IL 7 74 0.44
     Hu IL 8 54 -0.69
     Hu IL 9 77 0.13
     Hu IP 10 48 0.73
     Hu MCP 1 MCAF 53 -0.09
     Hu MIP 1a 55 -0.24
     Hu MIP 1b 18. 0.26
     Hu PDGF bb 47 0.3
     Hu RANTES 37 0.84
     Hu VEGF 45 0.69
     IFN a2 20 -0.29
     Il 12 p40 28 0.59
     Il 16 27 0.35
     Il 18 42 0.4
     Il 1a 63 0.04
     Il 2Ra 13 0.57
     Il 3 64 0.18
     LIF 29 -0.04
     M CSF 67 0.24
     MCP 3 26 0.19
     MIF 35 -0.48
     MIG 14 0.24
     SCF 65 -0.11
     SCGF b 78 0.65
     SDF 1a 22 0.39
     TNF b 30 -0.19
     TRAIL 66 0.38