Fig. 1
From: LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation
LMAP_S workflow. Flowchart exhibiting the lmap-s.pl workflow where stages are organized in a sequential fashion. The omission or inclusion of certain Stages helps devise specific workflows based on researcher requirements. Gray boxes reflect optional stages. Stages 3 (AOD) and 6 (PCC) produce reports only, seven in total. Stage 4 (ARC) additionally produces one report. NDP – Nucleotide Data Pre-processing, AE – MSA Estimation, AOD – MSA Outlier Detection, ARC – MSA Refinement and Consensus, PE – PT Estimation, PCC – PT Comparison and Consensus, PDP – PT Data Post-processing